diff --git a/scripts/ci/ci_install_dependency.sh b/scripts/ci/ci_install_dependency.sh
index 7d0735602..09fdb4104 100755
--- a/scripts/ci/ci_install_dependency.sh
+++ b/scripts/ci/ci_install_dependency.sh
@@ -106,6 +106,16 @@ $PIP_CMD install -e "python[${EXTRAS}]" --extra-index-url https://download.pytor
 # Install router for pd-disagg test
 $PIP_CMD install sglang-router $PIP_INSTALL_SUFFIX
 
+PYTHON_LIB_PATH=$(python3 -c "import site; print(site.getsitepackages()[0])")
+FLASH_ATTN_PATH="${PYTHON_LIB_PATH}/flash_attn"
+
+if [ -d "$FLASH_ATTN_PATH" ]; then
+    echo "Directory $FLASH_ATTN_PATH exists. Removing..."
+    rm -rf "$FLASH_ATTN_PATH"
+else
+    echo "Directory $FLASH_ATTN_PATH does not exist."
+fi
+
 # Install sgl-kernel
 SGL_KERNEL_VERSION_FROM_KERNEL=$(grep -Po '(?<=^version = ")[^"]*' sgl-kernel/pyproject.toml)
 SGL_KERNEL_VERSION_FROM_SRT=$(grep -Po -m1 '(?<=sgl-kernel==)[0-9A-Za-z\.\-]+' python/pyproject.toml)
@@ -147,3 +157,14 @@ python3 -c "import torch; print(torch.version.cuda)"
 
 # Prepare the CI runner (cleanup HuggingFace cache, etc.)
 bash "${SCRIPT_DIR}/prepare_runner.sh"
+
+PYTHON_LIB_PATH=$(python3 -c "import site; print(site.getsitepackages()[0])")
+FLASH_ATTN_PATH="${PYTHON_LIB_PATH}/flash_attn"
+
+if [ -d "$FLASH_ATTN_PATH" ]; then
+    echo "Directory $FLASH_ATTN_PATH exists. Removing..."
+    rm -rf "$FLASH_ATTN_PATH"
+    echo "error: this should not happen"
+else
+    echo "Directory $FLASH_ATTN_PATH does not exist."
+fi
diff --git a/sgl-kernel/CMakeLists.txt b/sgl-kernel/CMakeLists.txt
index 079eb2f45..9a438591a 100644
--- a/sgl-kernel/CMakeLists.txt
+++ b/sgl-kernel/CMakeLists.txt
@@ -593,9 +593,40 @@ install(DIRECTORY "${repo-triton_SOURCE_DIR}/python/triton_kernels/triton_kernel
 # ============================ Extra Install: FA4 ============================= #
 # TODO: find a better install condition.
 if ("${CUDA_VERSION}" VERSION_GREATER_EQUAL "12.8" OR SGL_KERNEL_ENABLE_SM100A)
-    # flash_attn/cute
-    install(DIRECTORY "${repo-flash-attention_SOURCE_DIR}/flash_attn/cute/"
-            DESTINATION "flash_attn/cute"
+
+    set(FLASH_ATTN_CUTE_SRC "${repo-flash-attention_SOURCE_DIR}/flash_attn/cute")
+    set(FLASH_ATTN_CUTE_DST "${CMAKE_CURRENT_BINARY_DIR}/flash_attn_origin/cute")
+
+    file(MAKE_DIRECTORY "${FLASH_ATTN_CUTE_DST}")
+
+    file(COPY "${FLASH_ATTN_CUTE_SRC}/"
+         DESTINATION "${FLASH_ATTN_CUTE_DST}"
+         PATTERN ".git*" EXCLUDE
+         PATTERN "__pycache__" EXCLUDE)
+
+    file(GLOB_RECURSE FLASH_ATTN_CUTE_DST_PY
+         "${FLASH_ATTN_CUTE_DST}/*.py")
+
+    foreach(FILE_PATH IN LISTS FLASH_ATTN_CUTE_DST_PY)
+        file(READ "${FILE_PATH}" FILE_CONTENT)
+
+        set(MODIFIED_CONTENT "${FILE_CONTENT}")
+
+        # The main goal is to avoid using "flash_attn" so that other libraries (such as transformers) do not mistakenly assume that "flash_attn" is already installed.
+
+        string(REPLACE "flash_attn.cute"
+                       "flash_attn_origin.cute"
+                       MODIFIED_CONTENT "${MODIFIED_CONTENT}")
+
+        if (NOT FILE_CONTENT STREQUAL MODIFIED_CONTENT)
+            file(WRITE "${FILE_PATH}" "${MODIFIED_CONTENT}")
+            message(STATUS "  - [FA4 Patch] Patched: ${FILE_PATH}")
+        endif()
+    endforeach()
+
+    install(DIRECTORY "${FLASH_ATTN_CUTE_DST}/"
+            DESTINATION "flash_attn_origin/cute"
             PATTERN ".git*" EXCLUDE
             PATTERN "__pycache__" EXCLUDE)
-    endif()
+
+endif()
diff --git a/sgl-kernel/python/sgl_kernel/_fa4_interface.py b/sgl-kernel/python/sgl_kernel/_fa4_interface.py
index 5411cfe16..ffd0563f5 100644
--- a/sgl-kernel/python/sgl_kernel/_fa4_interface.py
+++ b/sgl-kernel/python/sgl_kernel/_fa4_interface.py
@@ -19,9 +19,9 @@ import cutlass
 import cutlass.cute as cute
 import torch
 from cutlass.cute.runtime import from_dlpack
-from flash_attn.cute import utils
-from flash_attn.cute.flash_fwd import FlashAttentionForwardSm90
-from flash_attn.cute.flash_fwd_sm100 import FlashAttentionForwardSm100
+from flash_attn_origin.cute import utils
+from flash_attn_origin.cute.flash_fwd import FlashAttentionForwardSm90
+from flash_attn_origin.cute.flash_fwd_sm100 import FlashAttentionForwardSm100
 
 
 def maybe_contiguous(x):